Adobe Lightroom for scientific photos

As some readers may know, now I’m retired, I am deeply invested in a multiyear longitudinal study of (primarily) mosses (Bryophyta) at 25 plots near my home. This has been running since end of November 2020, with the first month spent deciding what to do and where.

I have also spend much of the first half of 2021 learning field work and tooling up with equipment and techniques for doing this project, and starting a couple of side projects, some because of suggestions from university bryologists. More about those some other day.

My primary dataset are photos, principally using macrophotography. I do have specimens and they are stored in the conventional way for bryology, as dried pieces of moss in paper envelopes documented with collection information. But because this survey entails getting one or more photos of each of my plots each week, as well as supporting photographs and videos, I now have 5200 high resolution photographs.

I had been storing these in Google Photos, but it offers no capability for mass tagging or editing EXIF data associated with photos, even as collected in albums. So there is no way to tag all photos in an album declaring, say, these or a bunch are Climacium americanum. I have struggled the last two months to find a way around this, including trying to write code to manage photos in Google Photos from R, and shopping for packages and utilities.

After asking at talkphotography.co.uk, Jonathan Ryan suggested Adobe Lightroom. At first I did not realize that it backs up its photos on Adobe Cloud rather than locally. I dunno.

Probably Plagiomnium
Cladonia coniocrea amidst Polytrichum commune

I am working to get my moss macrophotography back, thanks to professor emerita Janice Glime, and to Dr Des Callaghan who recommended excellent replacement apparatus from his extensive experience. Check out his photography and his projects.

Professor Glime is author of a definitive work on bryophyte ecology:

“Bryophyte Ecology is an ebook comprised of 5 volumes written by Janice Glime, Professor Emerita of Biological Sciences at Michigan Technological University. Chapter coauthors include Irene Bisang, S. Robbert Gradstein, J. Lissner, W. J. Boelema, and D. H. Wagner.

This book is written in the hope that it is useful to a broad audience, from children to seasoned professionals. Its citations help the scientist find further information. The images help the beginner to understand. Its aim is to broaden the group of people who appreciate and understand the roles that bryophytes play in our world.”



Updated, 1st May 2024, that is 2024J122.

About ecoquant

See https://wordpress.com/view/667-per-cm.net/ Retired data scientist and statistician. Now working projects in quantitative ecology and, specifically, phenology of Bryophyta and technical methods for their study, notably Macrophotography. Some photos of mine: https://www.flickr.com/photos/198372469@N03/
This entry was posted in Botany, bryology, bryophytes, longitudinal survey, longitudinal survey of mosses, mosses. Bookmark the permalink.

1 Response to Adobe Lightroom for scientific photos

  1. ecoquant says:


    And I am working to get my moss macrophotography back, thanks to professor emerita Janice Glime, and to Dr Des Callaghan who recommended excellent replacement apparatus from his extensive experience. (Check out his photography and his projects.) Professor Glime is also author of a definitive work on bryophyte ecology which is α  and ω for such work:


    Bryophyte Ecology is an ebook comprised of 5 volumes written by Janice Glime, Professor Emerita of Biological Sciences at Michigan Technological University. Chapter coauthors include Irene Bisang, S. Robbert Gradstein, J. Lissner, W. J. Boelema, and D. H. Wagner.


    This book is written in the hope that it is useful to a broad audience, from children to seasoned professionals. Its citations help the scientist find further information. The images help the beginner to understand. Its aim is to broaden the group of people who appreciate and understand the roles that bryophytes play in our world.
    (contact)

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