Category Archives: coronavirus

“Inferring change points in the spread of COVID-19 reveals the effectiveness of interventions”

J. Dehning et al., Science 369, eabb9789 (2020). DOI: 10.1126/science.abb9789 Source code and data. Note: This is not a classical approach to assessing strength of interventions using either counterfactuals or other kinds of causal inference. Accordingly, the argument for the … Continue reading

Posted in American Association for the Advancement of Science, American Statistical Association, Bayesian, Bayesian computational methods, causal inference, causation, changepoint detection, coronavirus, counterfactuals, COVID-19, epidemiology, SARS-CoV-2, state-space models, statistical series, time series | Leave a comment

COVID-19 statistics, a caveat : Sources of data matter

There are a number of sources of COVID-19-related demographics, cases, deaths, numbers testing positive, numbers recovered, and numbers testing negative available. Many of these are not consistent with one another. One could hope at least rates would be consistent, but … Continue reading

Posted in coronavirus, count data regression, COVID-19, descriptive statistics, epidemiology, pandemic, policy metrics, politics, population biology, population dynamics, quantitative biology, quantitative ecology, sampling, SARS-CoV-2, statistical ecology, statistical series, statistics | 1 Comment

First substantial mechanism for long term immunity from SARS-CoV-2 : T-cells

M. Leslie, “T cells found in COVID-19 patients ‘bode well’ for long-term immunity“, Science, doi:10.1126/science.abc8120. A. Grifoni, et al, “Targets of T cell responses to SARS-CoV-2 coronavirus in humans with COVID-19 disease and unexposed individuals“, Cell, 14th May 2020. J. … Continue reading

Posted in American Association for the Advancement of Science, coronavirus, COVID-19, epidemiology, SARS-CoV-2 | Tagged | Leave a comment

Dissection of the Dr Judy Mikovits’ claims in AAAS Science

https://www.sciencemag.org/news/2020/05/fact-checking-judy-mikovits-controversial-virologist-attacking-anthony-fauci-viral h/t Dr Katharine Hayhoe @LinkedIn The Chronic Fatigue Syndrome retraction notice. Excerpt: Science asked Mikovits for an interview for this article. She responded by sending an empty email with, as attachments, a copy of her new book and a … Continue reading

Posted in American Association for the Advancement of Science, coronavirus, COVID-19, SARS-CoV-2, science, Science magazine | 3 Comments

Phase plane plots of COVID-19 deaths

There are many ways of presenting analytical summaries of new series data for which the underlying mechanisms are incompletely understood. With respect to series describing the COVID-19 pandemic, Tamino has used piecewise linear models. I have mentioned how I prefered … Continue reading

Posted in coronavirus, COVID-19, functional data analysis, pandemic, penalized spline regression, phase plane plot, SARS-CoV-2, splines | 12 Comments

Machiavelli

It’s right out of Machiavelli’s The Prince. #covid_19 #coronavirus Even for the Trump administration, it is odd they are pushing #Hydroxychloroquine and #Azithromycin so hard, against medical advice and evidence. I’ve thought about this and, given the growing animosity between … Continue reading

Posted in American Association for the Advancement of Science, American Statistical Association, anti-science, coronavirus, COVID-19, Machiavelli, SARS-CoV-2 | Leave a comment

New COVID-19 incidence in the United States as AR(1) processes

There are several sources of information regarding Covid-19 incidence now available. This post uses data from a single source: the COVID Tracking Project. In particular I restrict attention to cumulative daily case counts for the United States, the UK, and … Continue reading

Posted in coronavirus, COVID-19, epidemiology, pandemic, regression, SARS-CoV-2 | Leave a comment