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# Category Archives: quantitative biology

## `Environmental science in a post-truth world’ (Lubchenco and Kammen)

Jane Lubchenco is a Professor at Oregon State University, and was administrator of the U.S. NOAA from 2009 through 2013, the U.S. Science Envoy for the Ocean at the State Department from 2014 to 2016, and the president of the … Continue reading

Posted in Akaike Information Criterion, American Association for the Advancement of Science, American Statistical Association, being carbon dioxide, Buckminster Fuller, climate, climate change, coastal communities, coasts, ecological services, ecology, environment, environmental law, evidence, global warming, Humans have a lot to answer for, Hyper Anthropocene, ignorance, Jane Lubchenco, marine biology, mass extinctions, population biology, population dynamics, quantitative biology, quantitative ecology, risk, science, Spaceship Earth, sustainability, T'kun Olam, temporal myopia, the tragedy of our present civilization
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## Carbon Sinks in Crisis — It Looks Like the World’s Largest Rainforest is Starting to Bleed Greenhouse Gasses

Originally posted on robertscribbler:

Back in 2005, and again in 2010, the vast Amazon rainforest, which has been aptly described as the world’s lungs, briefly lost its ability to take in atmospheric carbon dioxide. Its drought-stressed trees were not growing…

Posted in bifurcations, carbon dioxide, carbon dioxide sequestration, changepoint detection, climate, climate change, climate disruption, disruption, dynamical systems, environment, exponential growth, fossil fuels, geophysics, global warming, IPCC, Lévy flights, Lorenz, Minsky moment, model-free forecasting, physics, population biology, population dynamics, Principles of Planetary Climate, quantitative biology, quantitative ecology, random walk processes, Ray Pierrehumbert, reason, reasonableness, regime shifts, risk, Stefan Rahmstorf, the right to be and act stupid, the tragedy of our present civilization, UU Humanists
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## “Holy crap – an actual book!”

Originally posted on mathbabe:

Yo, everyone! The final version of my book now exists, and I have exactly one copy! Here’s my editor, Amanda Cook, holding it yesterday when we met for beers: Here’s my son holding it: He’s offered…

Posted in American Association for the Advancement of Science, Buckminster Fuller, business, citizen science, citizenship, civilization, complex systems, confirmation bias, data science, data streams, deep recurrent neural networks, denial, economics, education, engineering, ethics, evidence, Internet, investing, life purpose, machine learning, mathematical publishing, mathematics, mathematics education, maths, moral leadership, multivariate statistics, numerical software, numerics, obfuscating data, organizational failures, politics, population biology, prediction, prediction markets, privacy, quantitative biology, quantitative ecology, rationality, reason, reasonableness, rhetoric, risk, Schnabel census, smart data, sociology, statistical dependence, statistics, the right to be and act stupid, the right to know, the value of financial assets, transparency, UU Humanists
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## Bayesian blocks via PELT in R

The Bayesian blocks algorithm of Scargle, Jackson, Norris, and Chiang has an enthusiastic user community in astrostatistics, in data mining, and among some in machine learning. It is a dynamic programming algorithm (see VanderPlas referenced below) and, so, exhibits optimality … Continue reading

Posted in American Statistical Association, AMETSOC, anomaly detection, astrophysics, Cauchy distribution, changepoint detection, engineering, geophysics, multivariate statistics, numerical analysis, numerical software, numerics, oceanography, population biology, population dynamics, Python 3, quantitative biology, quantitative ecology, R, Scargle, spatial statistics, square wave approximation, statistics, stepwise approximation, time series, Woods Hole Oceanographic Institution
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## On Smart Data

One of the things I find surprising, if not astonishing, is that in the rush to embrace Big Data, a lot of learning and statistical technique has been left apparently discarded along the way. I’m hardly the first to point … Continue reading

Posted in Akaike Information Criterion, Bayes, Bayesian, Bayesian inversion, big data, bigmemory package for R, changepoint detection, data science, data streams, dlm package, dynamic generalized linear models, dynamic linear models, dynamical systems, Generalize Additive Models, generalized linear models, information theoretic statistics, Kalman filter, linear algebra, logistic regression, machine learning, Markov Chain Monte Carlo, mathematics, mathematics education, maths, maximum likelihood, MCMC, Monte Carlo Statistical Methods, multivariate statistics, numerical analysis, numerical software, numerics, quantitative biology, quantitative ecology, rationality, reasonableness, sampling, smart data, state-space models, statistical dependence, statistics, the right to know, time series
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## David Suzuki on Agroecology

See Feeding humanity in a warming world. Dr Suzuki links University of California, Berkeley, Professor Miguel Altieri’s “Principles and strategies for designing sustainable farming systems“.

Posted in adaptation, agriculture, Anthropocene, argoecology, Buckminster Fuller, carbon dioxide sequestration, climate, climate change, climate disruption, conservation, consumption, David Suzuki, demand-side solutions, drought, ecology, environment, Epcot, extended supply chains, food, greenhouse gases, Hyper Anthropocene, Life Cycle Assessment, local generation, Miguel Altieri, optimization, quantitative biology, quantitative ecology, resiliency, Sankey diagram, sociology, Spaceship Earth, spatial statistics
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## “Things going fast”: Summary of a class on climate disruption taught by Professor Ricky Rood

Dr Ricky Rood is a professor at the University of Michigan, both a meteorologist and climate scientist, and a regular contributor to the climate and weather blogs at Weather Underground. In a post from April 6th (titled “No Way to … Continue reading

Posted in AMETSOC, Antarctica, Arctic, bridge to nowhere, carbon dioxide, Carbon Worshipers, climate, climate change, climate disruption, climate justice, corporate litigation on damage from fossil fuel emissions, environment, evidence, fossil fuels, geophysics, glaciers, glaciology, global warming, Hyper Anthropocene, James Hansen, liberal climate deniers, MA, marine biology, Massachusetts, meteorology, methane, MIchael Mann, natural gas, New England, physics, quantitative biology, quantitative ecology, rationality, reasonableness, Ricky Rood, science, sea level rise, sustainability, the right to be and act stupid, the right to know, the tragedy of our present civilization, zero carbon
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## Of my favorite things …

(Clarifying language added 4 Apr 2016, 12:26 EDT.) I just watched an episode from the last season of Star Trek: The Next Generation entitled “Force of Nature.” As anyone who pays the least attention to this blog knows, opposing human … Continue reading

Posted in Anthropocene, bridge to somewhere, bucket list, Buckminster Fuller, Carl Sagan, climate, climate change, climate disruption, climate education, compassion, data science, Earle Wilson, ecology, Ecology Action, environment, evolution, geophysics, George Sughihara, global warming, Hyper Anthropocene, life purpose, mathematics, mathematics education, maths, numerical analysis, optimization, philosophy, physical materialism, physics, population biology, population dynamics, proud dad, quantitative biology, quantitative ecology, rationality, reasonableness, science, sociology, statistics, stochastic algorithms
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