Category Archives: biology

Biomes are too dynamic and intertwingled to be managed with simple political slogans: The case of Gnetum luofuense

Corners of the Environmentalist Establishment voice shrieks regarding what they call a biodiversity emergency, prompting even skilled journalists to claim the trend poses “as great a risk to humanity as climate change.” We went through the “insect apocalypse” fiasco, which … Continue reading

Posted in Aldo Leopold, American Association for the Advancement of Science, Anthropocene, Apis mellifera, bacteria, being carbon dioxide, Bill McKibben, biology, Botany One, climate disruption, climate emergency, climate policy, complex systems, control theory, Cult of Carbon, Daniel B Botkin, ecomodernism, ecopragmatism, Gnetum luofuense, gymnosperms, Steven Vogel | 5 Comments

Discordant harmonies in views of natural systems by The Sierra Club and others

This essay was first publish at the blog of the Green Congregation Committee, First Parish in Needham, on the Parish Realm Web site and communications board. The views obviously are those only of its author, not of First Parish or … Continue reading

Posted in Anthropocene, Association to Preserve Cape Cod, biology, Buckminster Fuller, Carl Safina, civilization, coastal communities, conservation, Daniel B Botkin, discordant harmonies, ecological disruption, ecological services, Ecological Society of America, ecology, environment, field biology, field science, First Parish in Needham, forest fires, fragmentation of ecosystems, Gaylord Nelson, George Sugihara, invasive species, Lotka-Volterra systems, marine biology, Nature's Trust, Peter del Tredici, philosophy of science, population biology, population dynamics, quantitative biology, quantitative ecology, riverine flooding, shorelines, stream flow, sustainability, sustainable landscaping, unreason, water, wishful environmentalism | Tagged | Leave a comment

Moss Evolution

A lecture by Professor Ralf Reski.

Posted in biology, bryology, bryophytes, evolution, mosses | Leave a comment

Bryophyta and the Importance of Sphagnum for the Carbon Cycle

Posted in American Bryological and Lichenological Society, biology, bryology, bryophytes, Carbon Cycle, carbon dioxide, climate disruption, climate emergency, ecological disruption, ecology, global warming, mosses | Tagged , , , | Leave a comment

New Meetup: Massachusetts Mosses and Lichens

I have started a new Meetup group: Massachusetts Mosses and Lichens. I am inviting anyone with an interest in mosses and lichens to join in, particularly if you live in the “greater Massachusetts area”. Because of pandemic, there’ll be no … Continue reading

Posted in ABLS, American Bryological and Lichenological Society, American Statistical Association, biology, Botany, Brent Mishler, bryology, bryophytes, citizen data, citizen science, ecology, field biology, field research, field science, Hale Reservation, Janice Glime, Jerry Jenkins, lichenology, lichens, longitudinal survey of mosses, macrophotography, maths, mesh models, mosses, Nancy G Slack, National Phenology Network, population biology, population dynamics, Ralph Pope, science, spatial statistics, statistical ecology, Sue Williams, the right to know, Westwood | Leave a comment

On storing and logging moss specimens

(Updated 2021-02-21) The standard way of storing moss specimens — at least that’s taught — is to press them, like most botanical specimens, or to store them, dessicated, in folders like these: That’s from Ralph Pope’s (2016) Guide, Pope, Ralph. … Continue reading

Posted in biology, bryology, bryophytes, data collection, field biology, field science | Leave a comment

Reanalysis of business visits from deployments of a mobile phone app

Updated, 20th October 2020 This reports a reanalysis of data from the deployment of a mobile phone app, as reported in: M. Yauck, L.-P. Rivest, G. Rothman, “Capture-recapture methods for data on the activation of applications on mobile phones“, Journal … Continue reading

Posted in Bayesian computational methods, biology, capture-mark-recapture, capture-recapture, Christian Robert, count data regression, cumulants, diffusion, diffusion processes, Ecological Society of America, ecology, epidemiology, experimental science, field research, Gibbs Sampling, Internet measurement, Jean-Michel Marin, linear regression, mark-recapture, mathematics, maximum likelihood, Monte Carlo Statistical Methods, multilist methods, multivariate statistics, non-mechanistic modeling, non-parametric statistics, numerics, open source scientific software, Pierre-Simon Laplace, population biology, population dynamics, quantitative biology, quantitative ecology, R, R statistical programming language, sampling, sampling algorithms, segmented package in R, statistical ecology, statistical models, statistical regression, statistical series, statistics, stepwise approximation, stochastic algorithms, surveys, V. M. R. Muggeo | 1 Comment

Review of “No … increase of Carbon sequestration from the greening Earth”

(As promised.) Introduction and Abstract This is a review, re-presentation, and report on the August 2019 article, Y. Zhang, C. Song, L. E. Band, G. Sun, (2019), “No proportional increase of terrestrial gross Carbon sequestration from the greening Earth“, Journal … Continue reading

Posted in adaptation, afforestation, agriculture, agroecology, algal blooms, American Statistical Association, argoecology, being carbon dioxide, biology, Botany, bridge to somewhere, carbon dioxide, carbon dioxide sequestration, chemistry, citizen science, clear air capture of carbon dioxide, climate, climate data, climate disruption, climate economics, climate mitigation, di-nitrogen oxide, ecocapitalism, ecological disruption, Ecological Society of America, ecomodernism, ecopragmatism, environment, evidence, food, forests, fossil fuels, geophysics, Glen Peters, Global Carbon Project, greenhouse gases, James Hansen, John Holdren, p-value, phytoplankton, pollution, population biology, quantitative biology, resource producitivity, scholarship, science education, significance test, statistics, Steven Chu, sustainability, sustainable landscaping, wishful environmentalism | 1 Comment

Weekend break: Theme for Earth Day

By John Williams:

Posted in agroecology, Aldo Leopold, American Association for the Advancement of Science, American Statistical Association, an uncaring American public, argoecology, biology, Botany, Buckminster Fuller, climate, David Suzuki, dynamical systems, E. O. Wilson, earth, Earth Day, ecological disruption, ecological services, Ecological Society of America, ecology, Ecology Action, ecomodernism, ecopragmatism, ecopragmatist, Eli Rabett, environment, Equiterre, evolution, fragmentation of ecosystems, global warming, green tech, greenhouse gases, greenwashing, invasive species, investing, investment in wind and solar energy, investments, Lawrence Berkeley National Laboratory, Lotka-Volterra systems, marine biology, Mathematics and Climate Research Network, microbiomes, NOAA, oceans, Peter del Tredici, Peter Diggle, Pharyngula, physical materialism, quantitative biology, quantitative ecology, rate of return regulation, scientific publishing, Spaceship Earth, statistical dependence, Stefan Rahmstorf, Tamino | Leave a comment

The shelf-break front, fisheries, climate change, and finding things out

From Woods Hole Oceanographic Institution. Support them. Claire and I do.

Posted in biology, climate change, climate disruption, ecological disruption, ecological services, ecology, global warming, oceanography, oceans, quantitative biology, quantitative ecology, WHOI, Woods Hole Oceanographic Institution | Leave a comment

667-per-cm.net, the Podcast: Episode 1.

Commencing today, I’m offering another channel of this blog, a podcast. This will range over the interface between people, their behavior, and the natural world. It’s primarily an opportunity for a less structured and more personal presentation of my experience … Continue reading

Posted in biology, earth, global warming, Nature, podcast, science | Leave a comment

Today, now, and what of the future?

From Aldo Leopold in his A Sand County Almanac: One of the penalties of an ecological education is that one lives alone in a world of wounds. Much of the damage inflicted on land is quite invisible to laymen. An … Continue reading

Posted in adaptation, agroecology, Aldo Leopold, American Association for the Advancement of Science, argoecology, being carbon dioxide, biology, Boston Ethical Society, Botany, Buckminster Fuller, Charles Darwin, climate, climate change, David Suzuki, Earle Wilson, Ecological Society of America, Ecology Action, ethics, George Sughihara, Glen Peters, global warming, Grant Foster, Humans have a lot to answer for, Hyper Anthropocene, population biology, quantitative biology, quantitative ecology, Spaceship Earth, sustainability, The Demon Haunted World, the right to be and act stupid, the right to know, the tragedy of our present civilization, tragedy of the horizon, unreason, UU Humanists | 2 Comments

What gives me hope … And it ain’t the small stuff

AS Arman Oganisian of Stable Markets writes “There are no solutions, only trade-offs.” That is a fundamentally engineering attitude. It is fundamentally about the economics, and, in particular, the dramatic drop in levelized cost of energy for wind and renewables, … Continue reading

Posted in Anthropocene, being carbon dioxide, biology, bridge to somewhere, Carbon Cycle, carbon dioxide, Carbon Worshipers, clean disruption, climate business, climate change, climate disruption, climate economics, climate justice, corporate litigation on damage from fossil fuel emissions, Cult of Carbon, decentralized electric power generation, decentralized energy, destructive economic development, disruption, distributed generation, ecological services, ecology, Ecology Action, economic trade, economics, engineering, environment, fossil fuel divestment, fossil fuels, global warming, Green Tech Media, greenhouse gases, grid defection, Humans have a lot to answer for, Hyper Anthropocene, investing, investment in wind and solar energy, investments, leaving fossil fuels in the ground, local generation, local self reliance, Sankey diagram, smart data, solar democracy, solar domination, solar energy, solar power, Sonnen community, the energy of the people, the green century, the tragedy of our present civilization, the value of financial assets, tragedy of the horizon, wind energy, wind power, wishful environmentalism, zero carbon | Leave a comment

Sustainable Landscaping

Update: 2018-05-26 It’s not about plants, not entirely. But it seems that, in one agricultural area, pollinators (bees) under stress have ceded their pollinating responsibility to a couple of species of exotic (read invasive) flies. See: J. R. Stavert, D. … Continue reading

Posted in adaptation, American Association for the Advancement of Science, argoecology, biology, Botany, Carl Safina, complex systems, conservation, ecological services, Ecological Society of America, ecology, Ecology Action, environment, fragmentation of ecosystems, invasive species, land use to fight, living shorelines, New England, population biology, population dynamics, quantitative biology, quantitative ecology, sustainability, sustainable landscaping, water as a resource | 4 Comments

The global vegetative biosphere

(Click on figure to see a larger image, and use browser Back Button to return to blog) Data derived in part from SeaWIFS and image is from the NASA Earth Observatory here. Related links: Global Biosphere Global Biosphere over time … Continue reading

Posted in argoecology, biology, Charles Darwin, complex systems, ecological services, Ecological Society of America, ecology, environment, Nature, nonlinear systems, oceanography, phytoplankton, population biology, quantitative biology, quantitative ecology, science | Leave a comment

on nonlinear dynamics of hordes of people

I spent a bit of last week at a symposium honoring the work of Charney and Lorenz in fluid dynamics. I am no serious student of fluid dynamics. I have a friend, Klaus, an engineer, who is, and makes a … Continue reading

Posted in Anthropocene, bifurcations, biology, Carl Safina, causation, complex systems, dynamic generalized linear models, dynamic linear models, dynamical systems, ecological services, ecology, Emily Shuckburgh, finance, Floris Takens, fluid dynamics, fluid eddies, games of chance, Hyper Anthropocene, investments, Lenny Smith, Lorenz, nonlinear, numerical algorithms, numerical analysis, politics, population biology, population dynamics, prediction markets, Principles of Planetary Climate, public transport, Ray Pierrehumbert, risk, sampling networks, sustainability, Timothy Lenton, Yale University Statistics Department, zero carbon, ``The tide is risin'/And so are we'' | 1 Comment

`How old is today?` (Carl Safina)

How old is today? light comes from everywhere and from nowhere. The ocean, glittering then vanishing in gauzy vapors, handles us more gently than anyone could have hoped. Snow flurries in and hurries out. Mists veil coasts so raw, so … Continue reading

Posted in Antarctica, Anthropocene, biology, Carl Safina, Charles Darwin, coastal communities, coasts, ecological services, Ecological Society of America, ecology, Ecology Action, Henry David Thoreau, humanism, Hyper Anthropocene, Nature, population biology, population dynamics | 1 Comment

Results of short literature search on impacts of climate change upon ecosystems and bird or animal migration patterns, from the journals of the Ecological Society of America

I decided to do a quick literature search on the impacts of climate change upon ecosystems and migration patterns. I could have kept the list private, but why not make it public? Not all these articles are purely about the … Continue reading

Posted in adaptation, American Statistical Association, Anthropocene, biology, climate change, climate education, climate models, complex systems, differential equations, dynamic generalized linear models, dynamical systems, ecological services, Ecological Society of America, ecology, Ecology Action, environment, evidence, global warming, Hyper Anthropocene, marine biology, mass extinctions, nonlinear systems, population biology, population dynamics, quantitative biology, quantitative ecology, tragedy of the horizon | Leave a comment

Is the answer to the democratization of Science doing more Citizen Science?

I have been following, with keen interest, the post and comment thread pertaining to “Democratising science” at the blog I monitor daily, … and Then There’s Physics. I think the core subject being discussed is a little different from my … Continue reading

Posted in American Association for the Advancement of Science, American Meteorological Association, American Statistical Association, AMETSOC, astronomy, astrophysics, biology, citizen data, citizen science, citizenship, data science, ecology, education, environment, evidence, life purpose, local self reliance, marine biology, mathematics, mathematics education, maths, moral leadership, new forms of scientific peer review, open source scientific software, science, science education, statistics, the green century, the right to know | Leave a comment

“Stochastic Parameterization: Towards a new view of weather and climate models”

Judith Berner, Ulrich Achatz, Lauriane Batté, Lisa Bengtsson, Alvaro De La Cámara, Hannah M. Christensen, Matteo Colangeli, Danielle R. B. Coleman, Daan Crommelin, Stamen I. Dolaptchiev, Christian L.E. Franzke, Petra Friederichs, Peter Imkeller, Heikki Järvinen, Stephan Juricke, Vassili Kitsios, François … Continue reading

Posted in biology, climate models, complex systems, convergent cross-mapping, data science, dynamical systems, ecology, Ethan Deyle, Floris Takens, George Sughihara, Hao Ye, likelihood-free, Lorenz, mathematics, meteorological models, model-free forecasting, physics, population biology, population dynamics, quantitative biology, quantitative ecology, Scripps Institution of Oceanography, state-space models, statistical dependence, statistics, stochastic algorithms, stochastic search, stochastics, Takens embedding theorem, time series, Victor Brovkin | 4 Comments

“Finding Dory”

From the scientific journal Nature, a preview: “Finding Dory”, movie Director: Andrew Stanton Opens 17 June 2016 Digital-animation giant Pixar releases the much-anticipated follow-up to its 2003 “Finding Nemo”, a film so successful that clownfish are now often referred to … Continue reading

Posted in biology, compassion, Disney, ecology, Epcot, marine biology, Pixar, population biology, science, science education, Scripps Institution of Oceanography, Spaceship Earth, Walt Disney Company, WHOI, Woods Hole Oceanographic Institution | Leave a comment

Alice Bell’s “A very short history of climate change research”

“A very short history of climate change research“, by Alice Bell. The story of scientists discovering climate change is longer than many of us tend to imagine. We’ve had a sense that what humans do might effect the climate since … Continue reading

Posted in astronomy, astrophysics, biology, carbon dioxide, civilization, climate, climate change, climate disruption, climate education, climate models, dynamical systems, ecology, environment, forecasting, fossil fuels, geophysics, global warming, IPCC, James Hansen, meteorology, Neill deGrasse Tyson, NOAA, oceanography, physics, population biology, Principles of Planetary Climate, rationality, Ray Pierrehumbert, reasonableness, risk, science, science education, Scripps Institution of Oceanography, sea level rise, spatial statistics, statistics, sustainability, temporal myopia, UNFCCC, WHOI | Tagged , | Leave a comment

It was the year 2000, Elizabeth Houghton had just died, and the plan was to restore the ecosystems about Fowl Meadow

Please remember Elizabeth Houghton as you pass by Routes 128 and 95 in Canton, looking north over her beloved Fowl Meadow and the Neponset River. She can no longer show you her photographs of the watershed under flood conditions and … Continue reading

Posted in biology, citizenship, consumption, destructive economic development, ecology, environment, ethics, exponential growth, floods, Hyper Anthropocene, ignorance, living shorelines, politics, population biology, prediction, rationality, reasonableness, risk, science, statistics, the right to know, transparency, University Station, Westwood | Leave a comment

Professor James Hansen responds and explains:

The recent paper by Hansen, Soto, and others has caused a stir, as I suspect it was intended to do so. I posted about this paper earlier. Now Professor Hansen has responded to the critics of his team’s work and … Continue reading

Posted in Anthropocene, arXiv, astrophysics, bifurcations, biology, bridge to nowhere, carbon dioxide, Carbon Tax, citizenship, civilization, clean disruption, climate, climate change, climate disruption, climate models, COP21, denial, disingenuity, dynamical systems, ecology, education, environment, ethics, forecasting, fossil fuel divestment, fossil fuels, geophysics, global warming, investment in wind and solar energy, IPCC, James Hansen, maths, meteorology, NASA, NCAR, new forms of scientific peer review, NOAA, oceanography, open source scientific software, physics, Principles of Planetary Climate, probability, rationality, reasonableness, science, science education, sea level rise, temporal myopia, the right to know, time series, WAIS, zero carbon | 1 Comment

rappin’ the truth

(Hat tip to the Yale Climate Connections project.)

Posted in Bill Nye, biology, Boston, carbon dioxide, chemistry, citizen science, climate, climate change, climate disruption, climate education, ecology, education, environment, evolution, geophysics, global warming, investment in wind and solar energy, Neill deGrasse Tyson, physics, population biology, rationality, reasonableness, science, science education | 1 Comment

Links explaining climate change Kevin Jones liked

Kevin Jones asked me if I could put the links in a Comment on a post I made at Google+ in a collection or something for reference. I am therefore repeating the Comment with these details below. No one simple … Continue reading

Posted in Anthropocene, astrophysics, bifurcations, biology, bridge to nowhere, carbon dioxide, chance, citizen science, citizenship, civilization, clean disruption, climate, climate change, climate disruption, climate education, climate models, climate zombies, conservation, consumption, decentralized electric power generation, decentralized energy, demand-side solutions, dynamical systems, ecology, economics, efficiency, energy, energy reduction, environment, exponential growth, forecasting, fossil fuel divestment, fossil fuels, geophysics, global warming, history, investing, investment in wind and solar energy, IPCC, living shorelines, mass extinctions, mass transit, mathematics, maths, meteorology, methane, microgrids, model comparison, NASA, natural gas, NCAR, NOAA, oceanography, physics, politics, population biology, Principles of Planetary Climate, rationality, Ray Pierrehumbert, reasonableness, science, science education, Scripps Institution of Oceanography, sea level rise, sociology, solar power, statistics, temporal myopia, the right to know, Tony Seba, WHOI, wind power, zero carbon | Leave a comment

“Can we avert the post-antibiotic world?”

(Hat tip to Dan Satterfield.) A TED talk. Bacteria develop resistence so quickly that pharmaceutical companies have decided developing new ones is not in their best interest. From the speaker, Maryn McKenna.

Posted in adaptation, bacteria, biology, dynamical systems, ecology, environment, evolution, forecasting, humanism, population biology, rationality, statistics, sustainability, temporal myopia | Leave a comment

ARTICLE: “Why the rise of green energy makes utility companies nervous”

Bill McKibben writes about the hope of domestic and home solar, and air-based heat pumps (*), in The New Yorker. I share that hope. Another good book on the same: Mark Schapiro’s Carbon Shock: A tale or risk and calculus … Continue reading

Posted in biology, clean disruption, climate, climate change, climate disruption, climate education, decentralized electric power generation, decentralized energy, demand-side solutions, ecology, economics, energy, energy reduction, environment, ethics, investment in wind and solar energy, rationality, reasonableness, solar power, sustainability, wind power, zero carbon | Leave a comment

Destroying the Most Persistent Scientific Myth In America – Dan’s Wild Wild Science Journal – AGU Blogosphere

Destroying the Most Persistent Scientific Myth In America – Dan's Wild Wild Science Journal – AGU Blogosphere.

Posted in Bayesian, biology, carbon dioxide, chance, citizen science, climate, climate change, climate disruption, climate education, denial, ecology, education, ensembles, environment, forecasting, geophysics, global warming, hiatus, history, IPCC, meteorology, NCAR, NOAA, obfuscating data, physics, probability, rationality, reasonableness, science, science education, spatial statistics, statistics, temporal myopia, time series | Leave a comment

“This planet comes with limits”

Carl Safina elaborates on the limits of exploitation. It’s consistent with what David Suzuki conveys in his succinct presentation, linked below: As Suzuki says, this isn’t politics or opinion, or even biology, it’s just math.

Posted in Anthropocene, biology, carbon dioxide, citizenship, climate change, ecology, environment, forecasting, history, humanism, physics, population biology, rationality, reasonableness, risk | Leave a comment